Employing NGS technology for improved, non-invasive early detection, staging and prediction of progression in lymphoma patients
Project information
| Acronym | NOVEL |
|---|---|
| Call |
JTC 2016
Joint Call (JTC 2016)
|
| Duration | 36 months |
| Coordinator | Paolo Ghia |
| Institution | IRCCS Ospedale San Raffaele |
| Coordinator country | IT |
| Cancer type | Lymph nodes |
Abstract
• Hypothesis
The gold standard source of material to establish the diagnosis and define the stage (including pre-malignant situations) of most B-NHL is tissue biopsy, an invasive procedure, being physically damaging, painful and even potentially dangerous. This proposal is based on the hypothesis that the use of minimally invasive procedures such as liquid biopsies from peripheral blood assessed by high-throughput analysis of molecular biomarkers will allow to (i) detect early disease through screening populations at risk; (ii) risk-stratify individuals carrying pre-lymphomatous conditions for progression to overt lymphoma; (iii) refine molecular diagnosis and staging in B-NHL.
• Aims
1. To detect early disease through screening procedures in populations at risk.
2. To risk-stratify individuals carrying pre-lymphomatous conditions or indolent lymphomas for progression to overt disease.
3. To refine diagnosis and staging in B-NHL.
• Methods
We will utilize Next Generation Sequencing (NGS) in circulating tumor cells (CTCs) and circulating tumor DNA (ctDNA) obtained from peripheral blood samples (a.k.a. liquid biopsy), and perform immunogenetic analysis of the unique IGHV-IGHD-IGHJ monoclonal rearrangements and analysis of recurrently mutated genes in B-NHL/CLL.
• Expected results
We expect to achieve validated and implemented procedural and analytical pipelines for NGS profiling of B-NHL/CLL-specific biomarkers in liquid biopsies. We will also define validated and implemented bioinformatics workflows and tools for widespread use in a diagnostic setting.
• Potential impact
The successful completion of the NOVEL proposal will allow to achieve accurate outcome prediction and improved survival through risk stratification of individuals carrying pre-lymphomatous or indolent conditions for evolution to overt lymphoma and refined molecular diagnosis/staging in the aggressive forms. Potentially, the procedural and analytical pipelines could be utilized also for the management of other neoplastic conditions.
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Countries involved
5Funding organisations
6Consortium partners
7 participants| Role | Participant | Organisation | City | Country |
|---|---|---|---|---|
| Coordinator | Professor Paolo Ghia | IRCCS Ospedale San Raffaele | Milano | IT |
| Partner | Professor Christiane Pott | University Hospital Schleswig-Holstein Campus Kiel | Kiel | DE |
| Partner | Professor Frederic Davi | Université Pierre et Marie Curie & Hôpital Pitié-Salpêtrière | Paris | FR |
| Partner | PhD Anastasia Hadzidimitriou | Centre for Research and Technology Hellas (CERTH) | Thessaloniki | GR |
| Partner | BEng, PhD Dimitris Vassiliadis | EXODUS SA | Athens | GR |
| Partner | Professor Anton W. Langerak | Erasmus MC | Rotterdam | NL |
| Partner | Professor Roel Vermeulen | Institute for Risk Assessment Sciences, Utrecht University | Utrecht | NL |