Building an ex vivo complex tumour microenvironment platform for development of combination therapies and drug resistance studies in head neck cancer
Project information
| Acronym | BePrepared |
|---|---|
| Call |
JTC 2024
Joint Call (JTC 2024)
|
| Duration | 36 months |
| Coordinator | Ingeborg Tinhofer-Keilholz |
| Institution | Charité – Universitätsmedizin Berlin |
| Coordinator country | DE |
| Cancer type | Lip, oral cavity and pharynx |
Abstract
Current drug development predominantly relies on tumour cell lines, xenograft models, and, more recently, patient-derived organoids (PDOs). However, a significant limitation of these models is their lack of human tumour microenvironment (TME) components, including immune and stromal cells, which can substantially influence treatment efficacy. We propose that incorporating human TME components into PDOs could significantly enhance their utility in the development of novel, effective combination therapies and the identification of relevant biomarkers to guide treatment selection.
Our objectives are threefold: (1) To complexify PDOs with TME components; (2) To perform screens including standard treatments, novel drug combinations and radiotherapy-drug combinations in clinical development, aiming to specifically identify the impact of the TME on tumour cell killing; (3) To elucidate the molecular mechanisms of resistance and identify potential novel targets for combination therapies and biomarkers for patient selection.
This project leverages the consortium's extensive expertise in patient-derived xenograft (PDX) and organoid (PDO) models, multi-omics tumour profiling, biomarker development, and drug/radiosensitivity screens. We will utilise organoid models derived from fresh patient specimens and established PDO/PDX models. PDOs will be complexed with HLA-matched allogeneic or autologous TME components, employing either standard techniques or innovative bioprinting. Model refinement will involve adapting protocols to mimic in vivo conditions of treatment resistance, such as hypoxia and altered glucose metabolism. We will employ multiparametric fluorescence imaging for evaluating drug efficacy in tumour cell eradication and the role of TME therein. We will use single-cell RNA sequencing, spatial transcriptomics and proteomics to elucidate resistance mechanisms arising from tumour-TME interactions and biomarker identification.
Maximizing the potential of our findings, our collaborative partnership especially in EU projects, with its long-standing expertise in clinical trials for HNSCC, will ensure that promising results can lead to future studies investigating the clinical efficacy of candidate combination therapies. This holds significant medical and socioeconomic benefits for managing high-burden, recurrence-prone HNSCC.
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Countries involved
4Funding organisations
3Consortium partners
5 participants| Role | Participant | Organisation | City | Country |
|---|---|---|---|---|
| Coordinator | Ingeborg Tinhofer-Keilholz | Charité – Universitätsmedizin Berlin | Berlin | DE |
| Partner | Sandra Schmitz | Saint-Luc University Hospital and Université Catholique de Louvain | Woluwe-Saint-Lambert | BE |
| Partner | Ana Cristina Afonseca Pestana | Charité – Universitätsmedizin Berlin | Berlin | DE |
| Partner | Giovanni Blandino | IRCSS Regina Elena National Cancer Institute | Rome | IT |
| Partner | Daniela-Elena Costea | University of Bergen | Bergen | NO |